Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs35269980 chr10:135056215 T/TA 2.56E-14 294 21.73 18.23 3.33 KM Plot
CESC rs35270880 chr11:49060131 AT/ATT 2.26E-6 294 21.2 26.43 5.53 KM Plot
CESC rs35462273 chr3:160991877 C/T 2.55E-5 293 25.03 19.68 19.4 KM Plot
CESC rs35644760 chr2:3488871 C/T 2.24E-8 294 20.73 30.63 1.43 KM Plot
CESC rs35764394 chr9:136266395 A/G 7.81E-5 290 21.2 26.13 11.6 KM Plot
CESC rs35912586 chr4:57931333 C/T 2.69E-8 295 21.2 26.2 11.6 KM Plot
CESC rs35954228 chr12:12487007 AC/A 0 293 22.28 20.95 0.47 KM Plot
CESC rs35969071 chr7:123201484 C/T 5.0E-6 288 22.83 18.07 3.72 KM Plot
CESC rs36004403 chr7:123100463 CT/C 3.3E-6 293 23.42 18.27 3.72 KM Plot
CESC rs36027930 chr4:57936836 T/A 2.21E-8 298 21.2 28.88 11.6 KM Plot
CESC rs36097906 chr7:123081406 A/AG 4.64E-6 295 24.15 18.4 3.72 KM Plot
CESC rs36104554 chr3:129224193 C/T 4.83E-5 295 21.73 20.63 14.73 KM Plot
CESC rs373220621 chr1:59089785 A/G 3.59E-5 295 21.23 24.6 13.8 KM Plot
CESC rs3750849 chr10:135055251 G/A 1.89E-14 295 21.73 17.07 3.33 KM Plot
CESC rs3754025 chr1:112303237 T/A 0 298 21.33 20.47 4.07 KM Plot